WebbCircular layout is an efficient way for the visualization of huge amounts of information. Here this package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of the package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily … Webb29 juli 2024 · simpleEnrichment包能够让我们在繁多的GO terms中找到重点,从而更好的进行下一步分析,在实际使用过程中,由于代码简单,还是非常方便的,大家可以在科研 …
simplifyGO : Simplify Gene Ontology (GO) enrichment results
WebbSimplify Functional Enrichment Results Bioconductor version: Release (3.16) A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is … Webb22 mars 2024 · simplifyEnrichment: Simplify functional enrichment results; simplifyGO: Simplify Gene Ontology (GO) enrichment results; simplifyGOFromMultipleLists: Perform simplifyGO analysis with multiple lists of GO IDs; subset_enrichResult: Subset method of the enrichResult class; term_similarity: Similarity between terms based on the overlap of … pseta bursary application form 2021
simplifyEnrichment: an R/Bioconductor package for Clustering and …
Webb1 nov. 2024 · The simplifyEnrichment package clusters functional terms into groups by clustering the similarity matrix of the terms with a new proposed method “binary cut” which recursively applies partition around medoids (PAM) with two groups on the similarity matrix and in each iteration step, a score is assigned to decide whether the group of gene sets … WebbProvides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 … WebbDOI: 10.18129/B9.bioc.DO.db A set of annotation maps describing the entire Disease Ontology. Bioconductor version: Release (3.16) A set of annotation maps describing the entire Disease Ontology assembled using data from DO horse tack what is it